Publications of the Faulknerlab

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64 entries « 2 of 2 »

2009

Taft, Ryan J; Glazov, Evgeny A; Cloonan, Nicole; Simons, Cas; Stephen, Stuart; Faulkner, Geoffrey J; Lassmann, Timo; Forrest, Alistair R R; Grimmond, Sean M; Schroder, Kate; Irvine, Katharine; Arakawa, Takahiro; Nakamura, Mari; Kubosaki, Atsutaka; Hayashida, Kengo; Kawazu, Chika; Murata, Mitsuyoshi; Nishiyori, Hiromi; Fukuda, Shiro; Kawai, Jun; Daub, Carsten O; Hume, David A; Suzuki, Harukazu; Orlando, Valerio; Carninci, Piero; Hayashizaki, Yoshihide; Mattick, John S

Tiny RNAs associated with transcription start sites in animals (Journal Article)

Nat. Genet., 41 (5), pp. 572–578, 2009.

(Abstract | Links | BibTeX)

Faulkner, Geoffrey J; Kimura, Yasumasa; Daub, Carsten O; Wani, Shivangi; Plessy, Charles; Irvine, Katharine M; Schroder, Kate; Cloonan, Nicole; Steptoe, Anita L; Lassmann, Timo; Waki, Kazunori; Hornig, Nadine; Arakawa, Takahiro; Takahashi, Hazuki; Kawai, Jun; Forrest, Alistair R R; Suzuki, Harukazu; Hayashizaki, Yoshihide; Hume, David A; Orlando, Valerio; Grimmond, Sean M; Carninci, Piero

The regulated retrotransposon transcriptome of mammalian cells (Journal Article)

Nat. Genet., 41 (5), pp. 563–571, 2009.

(Abstract | Links | BibTeX)

Faulkner, Geoffrey J; Carninci, Piero

Altruistic functions for selfish DNA (Journal Article)

Cell Cycle, 8 (18), pp. 2895–2900, 2009.

(Abstract | Links | BibTeX)

Consortium, FANTOM; Suzuki, Harukazu; Forrest, Alistair R R; ..., ; Faulkner, Geoffrey J; ..., ; Takahashi, Yukari; Kawai, Jun; Hayashizaki, Yoshihide

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line (Journal Article)

Nat. Genet., 41 (5), pp. 553–562, 2009.

(Abstract | Links | BibTeX | Altmetric)

2008

Cloonan, Nicole; Forrest, Alistair R R; Kolle, Gabriel; Gardiner, Brooke B A; Faulkner, Geoffrey J; Brown, Mellissa K; Taylor, Darrin F; Steptoe, Anita L; Wani, Shivangi; Bethel, Graeme; Robertson, Alan J; Perkins, Andrew C; Bruce, Stephen J; Lee, Clarence C; Ranade, Swati S; Peckham, Heather E; Manning, Jonathan M; McKernan, Kevin J; Grimmond, Sean M

Stem cell transcriptome profiling via massive-scale mRNA sequencing (Journal Article)

Nat. Methods, 5 (7), pp. 613–619, 2008.

(Abstract | Links | BibTeX)

Faulkner, Geoffrey J; Forrest, Alistair R R; Chalk, Alistair M; Schroder, Kate; Hayashizaki, Yoshihide; Carninci, Piero; Hume, David A; Grimmond, Sean M

A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE (Journal Article)

Genomics, 91 (3), pp. 281–288, 2008.

(Abstract | Links | BibTeX)

2007

Meadows, Nicholas A; Sharma, Sudarshana M; Faulkner, Geoffrey J; Ostrowski, Michael C; Hume, David A; Cassady, Alan I

The expression of Clcn7 and Ostm1 in osteoclasts is coregulated by microphthalmia transcription factor (Journal Article)

J. Biol. Chem., 282 (3), pp. 1891–1904, 2007.

(Abstract | Links | BibTeX)

2006

Forrest, Alistair R R; Taylor, Darrin F; Crowe, Mark L; Chalk, Alistair M; Waddell, Nic J; Kolle, Gabriel; Faulkner, Geoffrey J; Kodzius, Rimantas; Katayama, Shintaro; Wells, Christine; Kai, Chikatoshi; Kawai, Jun; Carninci, Piero; Hayashizaki, Yoshihide; Grimmond, Sean M

Genome-wide review of transcriptional complexity in mouse protein kinases and phosphatases (Journal Article)

Genome Biol., 7 (1), pp. R5, 2006.

(Abstract | Links | BibTeX)

Wells, Christine A; Chalk, Alistair M; Forrest, Alistair; Taylor, Darrin; Waddell, Nic; Schroder, Kate; Himes, Roy S; Faulkner, Geoffrey; Lo, Sandra; Kasukawa, Takeya; Kawaji, Hideya; Kai, Chikatoshi; Kawai, Jun; Katayama, Shintaro; Carninci, Piero; Hayashizaki, Yoshihide; Hume, David A; Grimmond, Sean M

Alternate transcription of the Toll-like receptor signaling cascade (Journal Article)

Genome Biology, 7 (2), pp. R10, 2006, ISSN: 1474-760X.

(Abstract | Links | BibTeX | Altmetric)

2005

Carninci, P; Kasukawa, T; Katayama, S; Gough, J; Frith, M C; Maeda, N; Oyama, R; Ravasi, T; Lenhard, B; Wells, C; Kodzius, R; Shimokawa, K; Bajic, V B; Brenner, S E; Batalov, S; Forrest, A R R; Zavolan, M; Davis, M J; Wilming, L G; Aidinis, V; Allen, J E; Ambesi-Impiombato, A; Apweiler, R; Aturaliya, R N; Bailey, T L; Bansal, M; Baxter, L; Beisel, K W; Bersano, T; Bono, H; Chalk, A M; Chiu, K P; Choudhary, V; Christoffels, A; Clutterbuck, D R; Crowe, M L; Dalla, E; Dalrymple, B P; de Bono, B; Gatta, Della G; di Bernardo, D; Down, T; Engstrom, P; Fagiolini, M; Faulkner, G; Fletcher, C F; Fukushima, T; Furuno, M; Futaki, S; Gariboldi, M; Georgii-Hemming, P; Gingeras, T R; Gojobori, T; Green, R E; Gustincich, S; Harbers, M; Hayashi, Y; Hensch, T K; Hirokawa, N; Hill, D; Huminiecki, L; Iacono, M; Ikeo, K; Iwama, A; Ishikawa, T; Jakt, M; Kanapin, A; Katoh, M; Kawasawa, Y; Kelso, J; Kitamura, H; Kitano, H; Kollias, G; Krishnan, S P T; Kruger, A; Kummerfeld, S K; Kurochkin, I V; Lareau, L F; Lazarevic, D; Lipovich, L; Liu, J; Liuni, S; McWilliam, S; Babu, Madan M; Madera, M; Marchionni, L; Matsuda, H; Matsuzawa, S; Miki, H; Mignone, F; Miyake, S; Morris, K; Mottagui-Tabar, S; Mulder, N; Nakano, N; Nakauchi, H; Ng, P; Nilsson, R; Nishiguchi, S; Nishikawa, S; Nori, F; Ohara, O; Okazaki, Y; Orlando, V; Pang, K C; Pavan, W J; Pavesi, G; Pesole, G; Petrovsky, N; Piazza, S; Reed, J; Reid, J F; Ring, B Z; Ringwald, M; Rost, B; Ruan, Y; Salzberg, S L; Sandelin, A; Schneider, C; Schönbach, C; Sekiguchi, K; a. Semple, C M; Seno, S; Sessa, L; Sheng, Y; Shibata, Y; Shimada, H; Shimada, K; Silva, D; Sinclair, B; Sperling, S; Stupka, E; Sugiura, K; Sultana, R; Takenaka, Y; Taki, K; Tammoja, K; Tan, S L; Tang, S; Taylor, M S; Tegner, J; Teichmann, S A; Ueda, H R; van Nimwegen, E; Verardo, R; Wei, C L; Yagi, K; Yamanishi, H; Zabarovsky, E; Zhu, S; Zimmer, A; Hide, W; Bult, C; Grimmond, S M; Teasdale, R D; Liu, E T; Brusic, V; Quackenbush, J; Wahlestedt, C; Mattick, J S; Hume, D A; Kai, C; Sasaki, D; Tomaru, Y; Fukuda, S; Kanamori-Katayama, M; Suzuki, M; Aoki, J; Arakawa, T; Iida, J; Imamura, K; Itoh, M; Kato, T; Kawaji, H; Kawagashira, N; Kawashima, T; Kojima, M; Kondo, S; Konno, H; Nakano, K; Ninomiya, N; Nishio, T; Okada, M; Plessy, C; Shibata, K; Shiraki, T; Suzuki, S; Tagami, M; Waki, K; Watahiki, A; Okamura-Oho, Y; Suzuki, H; Kawai, J; Hayashizaki, Y; Consortium, FANTOM; Group, {RIKEN Genome Exploration Research; Group)}, Genome Science Group (Genome Network Project Core

The transcriptional landscape of the mammalian genome (Journal Article)

Science (New York, N.Y.), 309 (5740), pp. 1559–1563, 2005, ISSN: 1095-9203.

(Abstract | Links | BibTeX | Altmetric)

2004

Huber, Thomas; Faulkner, Geoffrey; Hugenholtz, Philip

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments (Journal Article)

Bioinformatics (Oxford, England), 20 (14), pp. 2317–2319, 2004, ISSN: 1367-4803.

(Abstract | Links | BibTeX | Altmetric)

Meadows, Nicholas A; Faulkner, Geoffrey J; Wells, Christine A; Ravasi, Timothy; Hume, David A; Sankar, U; Hu, R; Ostrowski, Michael C; Cassady, Alan I

Novel genes regulated by microphthalmia transcription factor in macrophages and osteoclasts (Journal Article)

Journal of Bone and Mineral Research, 19 (S1), pp. S413–S413, 2004, ISSN: 1523-4681.

(Links | BibTeX | Altmetric)

2003

Wells, Christine A; Ravasi, Timothy; Faulkner, Geoffrey J; Carninci, Piero; Okazaki, Yasushi; Hayashizaki, Yoshihide; Sweet, Matthew; Wainwright, Brandon J; Hume, David A

Genetic control of the innate immune response (Journal Article)

BMC Immunol., 4 , pp. 5, 2003.

(Abstract | Links | BibTeX)

Wells, Christine A; Ravasi, Timothy; Sultana, Razvan; Yagi, Ken; Carninci, Piero; Bono, Hidemasa; Faulkner, Geoffrey; Okazaki, Yasushi; Quackenbush, John; Hume, David A; Group, Riken Ger; Members, G S L; Lyons, Paul A

Continued Discovery of Transcriptional Units Expressed in Cells of the Mouse Mononuclear Phagocyte Lineage (Journal Article)

Genome Research, 13 (6b), pp. 1360–1365, 2003, ISSN: 1088-9051, 1549-5469.

(Abstract | Links | BibTeX | Altmetric)

64 entries « 2 of 2 »